plant systematics

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Field Trip: Bergius Botanic Garden and Copenhagen Botanical Garden

There are very few downsides to working at a botanical garden, but one of them is that the growing season can be so busy that taking time off to visit other botanical gardens when they are at their peak is challenging. Case in point, my visit to Alaska Botanical Garden last October. Another case in point, this December’s visit to a couple of gardens in Scandinavia.

That’s right, Sierra and I took a long (and much needed) break from work and headed to the other side of the world for some fun in the occasional sun of Denmark and Sweden. While we were there we visited two botanical gardens, one in Stockholm and the other in Copenhagen. Considering we were there in December, we were impressed by how many things we found all around that were still blooming. We were also impressed by how much winter interest there was in the form of seed heads, spent flower stalks, and other plant parts left in place, as opposed to everything being chopped down to the ground as soon as fall arrives (which is often the case in our part of the world). We may not have been there in the warmest or sunniest time of year, but there was still plenty of natural beauty to capture our attention.

Bergius Botanic Garden

The first of the two gardens we visited was Bergius Botanic Garden (a.k.a. Bergianska trädgården) in Stockholm, Sweden. It is located near Stockholm University and the Swedish Museum of Natural History. It was founded in 1791 and moved to its current location in 1885. It was immediately obvious that the gardens were thoughtfully planned out, particularly the systematic beds in which the plants were organized according to their evolutionary relationship to each other. The extensive rock garden, which was a collection of small “mountains” with a series of paths winding throughout, was also impressive. Since we arrived just as the sun was beginning to set, we were happy to find that the Edvard Anderson Conservatory was open where we could explore a whole other world of plants, many more of which were flowering at the time.

Walking into Bergius Botanic Garden with the Edvard Anderson Conservatory in the distance.

Sierra poses with kale, collard, and Brussels sprout trees in the Vegetable Garden.

seed heads of velvetleaf (Abutilon theophrasti)

corky bark of cork-barked elm (Ulmus minor ‘Suberosa’)

pomelo (Citrus maxima) in the Edvard Anderson Conservatory

Camellia japonica ‘Roger Hall’ in the Edvard Anderson Conservatory

carrion-flower (Orbea variegata) in the Edvard Anderson Conservatory

Cape African-queen (Anisodontea capensis) in the Edvard Anderson Conservatory

Copenhgen Botanical Garden

The Copenhagen Botanical Garden (a.k.a. Botanisk have) is a 10 hectare garden that was founded in 1600 and moved to its current location in 1870. It is part of the University of Copenhagen and is located among a series of glasshouses built in 1874, a natural history museum, and a geological museum. Unfortunately, the glasshouses and museums were closed the day we visited, but we still enjoyed walking through the grounds and exploring the various gardens.

A large rock garden, similar to the one at Bergius, was a prominent feature. We learned from talking to a gardener working there that since Denmark is not known for its rich supply of large rocks, most of the rocks in the garden came from Norway. However, a section of the rock garden was built using fossilized coral found in Denmark that dates back to the time that the region was underwater.

Another great feature was the Nordic Beer Garden, a meticulously organized collection of plants used in beer recipes from the time of the Vikings to the Nordic brewers of today. Even though the majority of the plants in this garden were dormant, the interpretive signage and fastidious layout was memorable.

Walking into Copenhagen Botanical Garden with the Palm House in the distance.

lots of little pots of dormant bulbs

seed head of Chinese licorice (Glycyrrhiza echinata)

fruits of Chinese lantern (Physalis alkekengi)

alpine rose (Rhododendron ferrugineum)

Viburnum farreri ‘Nanum’

seed head of rose of Sharon (Hibiscus syriacus)

pods exposing the seeds of stinking iris (Iris foetidissima)

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Charles Darwin and the Phylogeny of State Flowers and State Trees

This is a guest post by Rachel Rodman. Photos by Daniel Murphy.

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Every U.S. state has its own set of symbols: an official flower, an official tree, and an official bird. Collectively, these organisms form the stuff of trivia and are traditionally presented in the form of a list.

But, lists…well. As charming as lists can sometimes be, lists are rarely very satisfying.

So I decided to try something different.

I am not, of course, the first person to be unhappy with the eclectic, disordered nature of many biological assemblages. In the 18th century, Linnaeus developed a classification system in order to make sense of that untidiness. Kingdom, Phylum, Class, and so on.

In the 19th century, Darwin set biodiversity into an even more satisfying intellectual framework, outlining a model that linked organisms via descent from a series of common ancestors. And, as early as 1837, he experimented with a tree-like structure, in order to diagram these relationships.

Following Darwin’s lead, I’ve worked to reframe the state flowers and state trees in terms of their evolutionary history (*see the methods section below). And today, in honor of Darwin’s 209th birthday, I am delighted to present the results to you.

Let’s start with the state flowers.

In this tree, Maine’s “white pine cone and tassel” forms the outgroup. Among all the state “flowers,” it is the only gymnosperm—and therefore, in fact, not actually a flower.

Notice, also, that the number of branches in this tree is 39—not 50. Most of this stems from the untidy fact that there is no requirement for each state to select a unique flower. Nebraska and Kentucky, for example, share the goldenrod; North Carolina and Virginia share the dogwood.

With the branch labeled “Rose,” I’ve compressed the tree further. The state flowers of Georgia, Iowa, North Dakota, New York, and Oklahoma are all roses of various sorts; with my data set (*see methods below), however, I was unable to disentangle them. So I kept all five grouped.

This is a rich tree with many intriguing juxtapositions. Several clades, in particular, link geographical regions that are not normally regarded as having a connection. Texas’ bluebonnet, for example, forms a clade with Vermont’s red clover. So, similarly, do New Hampshire’s purple lilac and Wyoming’s Indian paintbrush.

Texas bluebonnet (Lupinus texensis) – the state flower of Texas

The second tree—the tree of state trees—is similarly rewarding. This tree is evenly divided between angiosperms (19 species) and gymnosperms (17 species).

Iowa’s state tree is simply the “oak”—no particular species was singled out. To indicate Iowa’s selection, I set “IA” next to the node representing the common ancestor of the three particular oak species: white oak, red oak, and live oak, which were selected as symbols by other states.

Arkansas’ and North Carolina’s state tree, similarly, is the “pine,”—no particular species specified. I’ve indicated their choice in just the same way, setting “AR” and “NC” next to the node representing the common ancestor of the eight particular pine species chosen to represent other states.

In this tree of trees, as with the tree of flowers, several clades link geographical regions that are not usually linked—at least not politically. Consider, for example, the pairing of New Hampshire’s white birch with Texas’ tree, the pecan.

Another phylogenetic pairing also intrigued me: Pennsylvania’s eastern hemlock and Washington’s western hemlock. It evokes, I think, a pleasing coast-to-coast symmetry: two states, linked via an east-west cross-country bridge, over a distance of 2,500 miles

The corky bark of bur oak (Quercus macrocarpa). Oak is the state tree of Iowa.

In this post, I’ve presented the U.S. state flowers and U.S. state trees in evolutionary framework. The point in doing that was not to denigrate any of the small, human stories that lie behind these symbols—all of the various economic, historical, and legislative vagaries, which led each state to select these particular plants to represent them. (Even more importantly, I have no wish to downplay the interesting nature of any of the environmental factors that led particular plants to flourish and predominate in some states and not others.)

The point, instead, was to suggest that these stories can coexist and be simultaneously appreciated alongside a much larger one: the many million year story of plant evolution.

With Darwin’s big idea—descent with modification—the eclectic gains depth and meaning. And trivia become a story—a grand story, which can be traced back, divergence point by divergence point: rosids from asterids (~120 mya); eudicots from monocots (~160 mya); angiosperms from gymnosperms (~300 mya), and so on and so on.

So today, on Darwin’s 209th, here, I hope, is one of the takeaways:

An evolutionary framework really does make everything—absolutely everything: U.S. state symbols included—more fun, more colorful, more momentous, and more intellectually satisfying.

Thanks, Darwin.

*Methods:

To build these two trees, I relied on a data set from TimeTree.org, a website maintained by a team at Temple University. At the “Load a List of Species” option at the bottom of the page, I uploaded two lists of species in .txt format; each time, TimeTree generated a phylogenetic tree, which served as a preliminary outline.

Later, once I’d refined my outlines, I used the “Get Divergence Time For a Pair of Taxa” feature at the top of the page in order to search for divergence time estimates. As I reconstructed my trees in LibreOffice, I used these estimates to make my branch lengths proportional.

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Rachel Rodman has a Ph.D. in Arabidopsis genetics and presently aspires to recontextualize all of history, literature, and popular culture in the form of a phylogenetic tree. Won’t you help her?

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On the Genus Euphorbia

This is a guest post. Words and photos by Jeremiah Sandler.

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Suspicion

I collect cacti and succulents. The more I collect plants, the more and more I become interested in taxonomic and phylogenetic relationships between them. Not just my own plants – all of them. Most recently, the genus Euphorbia has been on my mind. My favorite species are E. meloformis var. valida and E. horrida.

I’m mostly familiar with the succulent and cacti-looking euphorbia (they are not true cacti) and a few ornamental annuals. Sometimes I would come across a species that I could determine was a euphorbia; but in trying to identify exactly which species, I found countless possibilities within the genus. It seemed odd to me that a single genus could contain so many different forms.

Turns out, Euphorbia consists of over 1800 separate species. What?! That is an insanely high number! Only about 20 genera of plants contain over 1000 separate species. Euphorbia is the fourth most populated genus among all genera of plants.

That staggering number got me thinking: how can a single genus have so many different species? How has the classification worked that out? Has the genus been phylogenetically examined? There’s no way a genus can be so huge. You know what breeders and collectors can do with that much genetic material in a single genus? The man-made hybrids seem endless.

Euphorbia globosa in bloom

Taxonomy

In older taxonomic practices, morphological similarities were the primary method of grouping individuals together. While that is still a common practice today, phylogenetic testing is now an accessible tool for organizing species into related groups.

Organizations such as the Angiosperm Phylogeny Group (APG) have been doing this advanced scientific research – analyzing DNA, doing detailed dissection, etc. Ultimately, they organize plant taxonomy and systematics with greater detail, and examine plant relationships genetically – phylogenetics.

Analyzing genomes is much more expensive and time consuming than observing morphologies. Now, a mix of methods is used, but DNA sequencing has definitely changed the systematics game in a big way. As a result of the APG’s incorporation of widespread phylogenetic DNA analyses, their taxonomical classifications are quickly becoming the generally accepted classifications among plant taxonomists.

Since the inclusion of genetic testing, many plant orders, families, and genera have been reorganized, renamed, expanded, or shrunk.

Euphorbia

One of the identifying features of euphorbias are their very unique flowers. All species in the genus have a cyathium, an inflorescence exclusively produced by euphorbias. Lacking in true petals, sepals, or nectaries, monoecious euphorbia flowers possess only the most essential parts of reproduction. However, bracts, extra-floral nectaries, and other structures surrounding the reproductive parts of the flowers make them appear superficially different.

It would be very time consuming to sequence the DNA of every member of this genus to see where they all fit. Approximately 10% of the euphorbias have been phylogenetically examined, and they confirm the traditional morphological placement. How about that?

Interestingly, of the species genetically analyzed, some were subsequently placed into the genus Euphorbia after historically being considered members of other genera.

Euphorbia horrida and Euphorbia obesa

So? What’s that mean?

Species within the same genus when crossed can (but not always) produce viable offspring. Sometimes they don’t because of differences in pollinators, flowering times, or geographic location, which prevents hybridization. Clades within plant genera also can affect intra-genus reproduction. For example, hard maples won’t naturally hybridize with soft maples, despite both being in the genus Acer. Perhaps the case is similar between the groups within Euphorbia.

As a plant collector and cacti and succulent enthusiast, imagining the endless amounts of hybrids within a massive genus is a fancy idea to me. The APG’s confirming of the initial classifications of Euphorbia into a massive genus makes the idea of endless hybrids all the more real.

Additional guest posts by Jeremiah Sandler:

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Jeremiah Sandler lives in southeast Michigan, has a degree in horticultural sciences, and is an ISA certified arborist. Follow him on Instagram: @j.deepsea